quantro - A test for when to use quantile normalization
A data-driven test for the assumptions of quantile normalization using raw data such as objects that inherit eSets (e.g. ExpressionSet, MethylSet). Group level information about each sample (such as Tumor / Normal status) must also be provided because the test assesses if there are global differences in the distributions between the user-defined groups.
Last updated 24 days ago
normalizationpreprocessingmultiplecomparisonmicroarraysequencing
6.40 score 2 packages 69 scripts 644 downloadsqsmooth - Smooth quantile normalization
Smooth quantile normalization is a generalization of quantile normalization, which is average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.
Last updated 24 days ago
normalizationpreprocessingmultiplecomparisonmicroarraysequencingrnaseqbatcheffect
5.87 score 1 packages 82 scripts 354 downloadsmethylCC - Estimate the cell composition of whole blood in DNA methylation samples
A tool to estimate the cell composition of DNA methylation whole blood sample measured on any platform technology (microarray and sequencing).
Last updated 24 days ago
microarraysequencingdnamethylationmethylationarraymethylseqwholegenome
5.18 score 19 stars 8 scripts 196 downloads