methylCC - Estimate the cell composition of whole blood in DNA methylation samples
A tool to estimate the cell composition of DNA methylation whole blood sample measured on any platform technology (microarray and sequencing).
Last updated 4 months ago
microarraysequencingdnamethylationmethylationarraymethylseqwholegenome
19 stars 2.27 score 150 dependenciesquantro - A test for when to use quantile normalization
A data-driven test for the assumptions of quantile normalization using raw data such as objects that inherit eSets (e.g. ExpressionSet, MethylSet). Group level information about each sample (such as Tumor / Normal status) must also be provided because the test assesses if there are global differences in the distributions between the user-defined groups.
Last updated 4 months ago
normalizationpreprocessingmultiplecomparisonmicroarraysequencing
2.00 score 146 dependencies 2 dependentsqsmooth - Smooth quantile normalization
Smooth quantile normalization is a generalization of quantile normalization, which is average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.
Last updated 4 months ago
normalizationpreprocessingmultiplecomparisonmicroarraysequencingrnaseqbatcheffect
1.31 score 117 dependencies 1 dependents